PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 243aa    MW: 26707.7 Da    PI: 5.9451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105555.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002692114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010105555.1  92 FSCNYCRRKFYSSQALGGHQNAH 114
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-481118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.23E-787120No hitNo description
PROSITE profilePS5015711.38592119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MITPDINLEC ENDSEVSSQV ASDVAPQDSF PNPSKESTTS SSCLTNIIKL QEDPAPVSLD  60
LSLQFSSSLN PELRGRGEVP THTSVSTNPR VFSCNYCRRK FYSSQALGGH QNAHKRERTM  120
AKRAMRMGIF SGRYNSLASL PLHGSPFRSL GVEAHAAAHQ RTIPSERPDM RGGARFQPGY  180
YGLPVFMEDD DMDLFWPGSF RQVDEGTGGG SELQFAQNSD MNIVTQMPSP RTDSSSPDLT  240
LKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105555.10.0Zinc finger protein 4
SwissprotQ392635e-47ZFP4_ARATH; Zinc finger protein 4
TrEMBLW9S2D20.0W9S2D2_9R
STRINGPOPTR_0010s11330.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-48zinc finger protein 4